Beautiful Mouse Brain Map Holds Clues to Neurological Disease

mouse brain pathways
Green and red fluorescent dyes trace two different pathways in the mouse brain, part of a new map of connectivity in the mammalian cortex. (Image credit: Cell, Zingg et al.)

Glowing new images of the mouse brain represent the most comprehensive mapping yet of the mammalian cortex.

Using fluorescent injections, researchers tracked the connections between regions of the mouse cortex, the outermost, wrinkled layer of the brain.

The project is important because the mouse brain is structured basically like other mammal brains — including humans', said study leader Hong-Wei Dong, a neuroscientist at the University of Southern California. Understanding how healthy brain structures chat back and forth should help researchers figure out how to fix problems when something goes wrong. [Inside the Brain: Images Through Time]

"Our ultimate goal is really to understand what is happens in all of these neurological or neuropsychiatric disorders, like autism or schizophrenia," Dong told Live Science.

Mapping the brain

Neuroscientists have increasingly focused on how brain regions connect in order to explain behavior, cognition and even disease. In previous studies, researchers have built brain maps for rats and primates by pulling together thousands of individual research studies on small portions of the brain. What Dong and his colleagues have done, however, is to collect a vast amount of data themselves. Their maps are based on only male mice of the same age, and allow for far more detail than earlier approaches.

"Our strength here is we have a collection of a huge amount of data, and we can then analyze them systematically," Dong said.

Researchers injected mouse brains with tracers that would show both incoming and outgoing signals. (Image credit: Cell, Zingg et al.)

The researchers injected fluorescent molecules in two locations in each of 300 mouse brains. These tracers travelled along the neuronal connections, showing which networks of brain cells were sending out signals to where, and which networks were answering back.

"The tracer in that injection site will tell you what areas that structure projects to and what areas project back to that structure," said Houri Hintiryan, a USC neuroscientist who was the co-lead researcher on the study with Dong. Capturing both incoming and outgoing messages is useful scientifically and allows researchers to use fewer mice, Hintiryan told Live Science.

Logical organization

The tracers revealed a methodical organization in the cortex.

"The brain is not randomly wired together," Hintiryan said. "There is a specific logic to its organization."

Neuron bodies in a mouse brain are shown in pink, and their projections (axons) in green. (Image credit: Cell, Zingg et al.)

The mouse cortex is organized into four somatic sensorimotor subnetworks, two medial subnetworks and two lateral subnetworks, Dong said. The somatic sensorimotor subnetworks each have their own functions, as determined from their connectivity: One controls facial movement, one the upper limb, one the lower limb and one the whiskers.

The medial subnetworks, so named because they sit along the midline of the brain, seem to integrate external information, such as information from the eyes and ears. One of the lateral networks handles sensory information from the body itself, including sensations such as hunger, cold and pain. The final lateral network seems to be a very complex center where information from all over the cortex converges.

The researchers make their maps available freely online at, and they plan to carry out similar work on the rest of the brain. Dealing with the massive amount of data generated by even pipsqueak mouse brains is a challenge, so they also hope to develop better tools to cope.

The project could inform the large-scale BRAIN Initiative, launched by President Obama in April 2013 with the goal of understanding how human brain networks function. After studying the brain connections of normal mice, Hintiryan said, researchers can then compare the healthy connectivity within the brains of mice with the rodent versions of Alzheimer's, Huntington's and other neurological disorders.

The findings appear online today (Feb. 27) in the journal Cell.  

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Stephanie Pappas
Live Science Contributor

Stephanie Pappas is a contributing writer for Live Science, covering topics ranging from geoscience to archaeology to the human brain and behavior. She was previously a senior writer for Live Science but is now a freelancer based in Denver, Colorado, and regularly contributes to Scientific American and The Monitor, the monthly magazine of the American Psychological Association. Stephanie received a bachelor's degree in psychology from the University of South Carolina and a graduate certificate in science communication from the University of California, Santa Cruz.